SeekDeep
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    • Pipeline
    • extractor/extractorPairedEnd
    • makeSampleDirectories
    • qluster
    • processClusters
    • popClusteringViewer

    • Pipeline Wrapper
    • setupTarAmpAnalysis

    • Utilities
    • genTargetInfoFromGenomes
    • SeekDeep control mixture benchmarking
    • SeekDeep Variant Calling
  • Tutorials

    • Single End
    • Ion Torrent with MIDs

    • Illumina Paired End
    • Paired End No MIDs/Barcodes
    • Paired End With MIDs/Barcodes
  • Misc Info
    • Illumina Paired End Info
  • References
    • versions
    • References

    Contents

    • Current Versions

    Current Versions

    The current versions from https://github.com/bailey-lab/SeekDeep

    origin  git@github.com:bailey-lab/SeekDeep.git 
    921ed2f794be884af8376e5d0b63e0acb9451ac4    refs/tags/1
    c40731716282b28dd2d5a36d53df4c6307f88650    refs/tags/2
    d7cfa46cd73dd4ec8f9fed7d3f58c4b7c0db3802    refs/tags/2.1
    c5626e4b6e94b9cbb94f2b3d05ea2783fcd0142d    refs/tags/2.1.1
    83a7f0429d8b411d58cd9e7fcb0aec23721b3115    refs/tags/2.2.0
    46f9e4aaff53ab6fccd94b0da1a6eae7412d095b    refs/tags/2.2.1
    cbdfc73de1359b6b6c8839c8f7e7924271fff070    refs/tags/v1
    8d106afe72c74c302160738e4cca4f56a1f488b9    refs/tags/v2.3.0
    5b4b12e58afd4a2ff3eb0aa74e9121f2d7b95652    refs/tags/v2.3.1
    2d2286d58c422d87102c0986f3fbf7c74027e250    refs/tags/v2.3.2
    8feb8941a83c483620c2129faf9c94d87691723a    refs/tags/v2.3.3
    7bf19c1ce39fb5061035701ae60fa6cc15d7cdd5    refs/tags/v2.3.4
    1f53fdbce96dc78cef25d9cdf317df4f788847a6    refs/tags/v2.4.0
    9bf8e88106c3124e317bd508eb0b7f6934bca088    refs/tags/v2.5.0
    5a4b17c3b4e0f5d1c732cb28c9debe6388e8d561    refs/tags/v2.5.1
    456d5b688028fa81be67525e6e3673e09bf3d3ca    refs/tags/v2.5.2
    0d156561a7c1ba4b7bacc7ea46b19eb2571b9794    refs/tags/v2.6.0
    30801e94024718ebb4e5bb48e31f454e90a3bba7    refs/tags/v2.6.1
    143698e957dd0236bcca07fed9f9439d39084e54    refs/tags/v2.6.2
    882c229cc6cb449f8889aaec0fe765f2e1fa6998    refs/tags/v2.6.3
    9ac350986e1ca143496e5c7cc4d668bc17bc4979    refs/tags/v2.6.3_1
    613fda7d879381d4dc040d23fed1ce52c5a8303a    refs/tags/v2.6.3_2
    464142ddcac35cf9010b378169d5044618f5b634    refs/tags/v2.6.4
    c0ee76a91173ad55f5c5e4d0d778a16e4863db53    refs/tags/v2.6.5
    de530cead1db3206c2599494250dbd2953abed2d    refs/tags/v3.0.0
    d7ee99d5becc7dace4b8a161960c61cf28ef5588    refs/tags/v3.0.1
    Source Code
    ```{r setup, echo=FALSE, message=FALSE}
    source("common.R")
    ```
    
    # Current Versions  
    
    The current versions from <https://github.com/bailey-lab/SeekDeep>
    
    ```{bash, echo = F}
    cd ~/hathaway/SeekDeep && git remote --verbose | sed 's/(.*//g' | sort | uniq
    ```
    
    ```{bash, echo = F}
    cd ~/hathaway/SeekDeep && git ls-remote --tags origin | egrep -v "\{"
    ```