SeekDeep
  • Home
  • Installing
    • Mac OS
    • Ubuntu
    • Windows
    • Vagrant/virtual image (any system)
  • Code
    • Github
  • Usages

    • Pipeline
    • extractor/extractorPairedEnd
    • makeSampleDirectories
    • qluster
    • processClusters
    • popClusteringViewer

    • Pipeline Wrapper
    • setupTarAmpAnalysis

    • Utilities
    • genTargetInfoFromGenomes
    • SeekDeep control mixture benchmarking
    • SeekDeep Variant Calling
  • Tutorials

    • Single End
    • Ion Torrent with MIDs

    • Illumina Paired End
    • Paired End No MIDs/Barcodes
    • Paired End With MIDs/Barcodes
  • Misc Info
    • Illumina Paired End Info
  • References
    • versions
    • References

    Contents

    • SeekDeep

    SeekDeep

    SeekDeep is one command line program that contains several programs within that all combined together make up the SeekDeep targeted sequencing analysis pipeline.

    1. Mac OS X
    2. Ubuntu
    3. Windows
    4. Virtual Image via vagrant and virtual box
    Source Code
    # SeekDeep
    SeekDeep is one command line program that contains several programs within that all combined together make up the SeekDeep targeted sequencing analysis pipeline. 
    
    1.  [Mac OS X](installingSeekDeep_Mac.html)  
    1.  [Ubuntu](installingSeekDeep_Ubuntu.html)  
    1.  [Windows](installingSeekDeep_Windows.html)  
    1.  [Virtual Image via vagrant and virtual box](installingSeekDeep_vagrant.html)